PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.005G109900.1
Common NamePHAVU_005G109900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB
Protein Properties Length: 233aa    MW: 26835 Da    PI: 5.0253
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.005G109900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-161461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g WT+eEd++l  +v+++G  +W++ ++  g+ R++k+c++rw++yl
  Phvul.005G109900.1 14 KGTWTPEEDKKLSAYVTRYGHWNWNLLPKFAGLERCGKSCRLRWLNYL 61
                        799*****************99************************97 PP

2Myb_DNA-binding53.17.6e-1767111147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg+ T+eEde ++++ + lG++ W+ Ia+ ++ gRt++++k++w++ 
  Phvul.005G109900.1  67 RGNYTKEEDETIIKLLQSLGNR-WSVIAAQLP-GRTDNEIKNYWHTN 111
                         899*******************.*********.***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.488961IPR017930Myb domain
SuperFamilySSF466893.99E-2911108IPR009057Homeodomain-like
SMARTSM007177.2E-111363IPR001005SANT/Myb domain
PfamPF002493.7E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-231568IPR009057Homeodomain-like
CDDcd001675.65E-91661No hitNo description
PROSITE profilePS5129423.19862116IPR017930Myb domain
SMARTSM007171.5E-1666114IPR001005SANT/Myb domain
PfamPF002492.6E-1567111IPR001005SANT/Myb domain
CDDcd001671.67E-1169112No hitNo description
Gene3DG3DSA:1.10.10.601.9E-2569115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVKCTFSEKS RLRKGTWTPE EDKKLSAYVT RYGHWNWNLL PKFAGLERCG KSCRLRWLNY  60
LRPNIKRGNY TKEEDETIIK LLQSLGNRWS VIAAQLPGRT DNEIKNYWHT NLKKRFQPLK  120
PQLSHSKDES PADEQVPTSQ STDSCTTATS PSQLSITTDT KENKFDNISE DDDFSFVDAY  180
QLQPVIESIW LEPYMVDISC IASAFLPEPD YFSPASDIEL VSDIELWDHS NE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-27121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150402e-59AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149917.11e-174hypothetical protein PHAVU_005G109900g
SwissprotQ7XBH42e-55MYB4_ORYSJ; Myb-related protein Myb4
TrEMBLV7BZ371e-174V7BZ37_PHAVU; Uncharacterized protein
STRINGGLYMA12G32530.21e-99(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-57myb domain protein 15